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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 76ATAC-seq
  • 74total RNA-seq
  • 32ChIP-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Capture-C
  • 3Hi-C
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 180Transcription
  • 82DNA accessibility
  • 32DNA binding
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 20histone
  • 20histone modification
  • 12control
  • 11narrow histone mark
  • transcription factor
  • 9broad histone mark
  • 1RNA binding protein
Date released
  • 710February, 2021
  • 383May, 2021
  • 364August, 2017
  • 341May, 2020
  • 308August, 2021
  • 307October, 2019
  • 214June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 162November, 2017
  • 115May, 2019
  • 108July, 2019
  • 74April, 2019
  • 73September, 2018
  • 64March, 2020
  • 61October, 2018
  • 60November, 2019
  • 59September, 2020
  • 52December, 2017
  • 49April, 2018
  • 47September, 2023
  • 39February, 2018
  • 35May, 2024
  • 25February, 2020
  • 24November, 2018
  • 23October, 2017
  • 19April, 2020
  • 16January, 2019
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 7December, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 123tsv
  • 95bed narrowPeak
  • 64xls
  • 57txt
  • 49bam
  • 36bigWig
  • 24tagAlign
  • 5bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 307Homo sapiens
Biosample type
  • 229tissue
  • 42in vitro differentiated cells
  • 33cell line
  • 4primary cell
Organ
  • 130kidney
  • 92heart
  • 24liver
  • 8embryo
  • 6blood vessel
  • 6epithelium
  • 6vasculature
  • 5connective tissue
  • 4pancreas
  • 2artery
  • 1adipose tissue
Project
  • 308AMP
Genome assembly (visualization)
  • 105GRCh38
  • 49hg19
Lab
  • 151AMP-T2D consortium
  • 128Katalin Susztak, Upenn
  • 25Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

308 results

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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney8644961
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
in vitro differentiated cells
neural progenitor cell10721
adipocyte11
osteoblast11
cell line
HepG297211
H1-hESC8
EndoC_BH12
HEK293T2
Synthesized DNA1
primary cell
hepatocyte4
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