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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
70
ChIP-seq
70
total RNA-seq
60
WGBS
38
single cell RNA-seq
23
snATAC-seq
18
small RNA-seq
15
RRBS
9
DNase-seq
8
Hi-C
3
FAIRE-seq
Assay category
126
Transcription
118
DNA accessibility
75
DNA methylation
70
DNA binding
8
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
193
bam
185
bigWig
134
zippedFastqFolder
118
bed narrowPeak
112
fastq
75
bigBed narrowPeak
65
tsv
30
bed bedMethyl
30
bigBed bedMethyl
14
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
txt
4
hdf5
1
csv
Organism
397
Homo sapiens
Biosample type
170
tissue
166
primary cell
61
cell line
Organ
118
pancreas
103
liver
93
epithelium
25
heart
20
brain
19
connective tissue
15
blood
15
bodily fluid
13
adipose tissue
12
musculature of body
12
vasculature
11
blood vessel
11
kidney
9
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
263
AMP
134
HPAP
Genome assembly (visualization)
201
hg19
158
GRCh38
Lab
199
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
2
audit script error
2
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
397 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
small RNA-seq
RRBS
DNase-seq
Hi-C
FAIRE-seq
tissue
liver
20
4
22
1
2
islet of Langerhans
18
6
1
1
heart left ventricle
2
2
4
1
spleen
6
2
1
body of pancreas
2
2
2
2
+ See 27 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 25 more…
cell line
HepG2
45
1
GM12878
15
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