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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
422
ChIP-seq
187
DNase-seq
1
snATAC-seq
Assay category
422
DNA binding
188
DNA accessibility
Target of assay
248
transcription factor
107
histone
107
histone modification
79
control
66
recombinant protein
58
broad histone mark
49
narrow histone mark
41
RNA binding protein
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
408
August, 2017
399
May, 2021
391
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
91
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
595
bam
529
bigWig
508
bed narrowPeak
507
bigBed narrowPeak
309
fastq
253
bed broadPeak
247
bigBed broadPeak
187
bed bed3+
78
tagAlign
3
tar
Organism
610
Homo sapiens
Biosample type
300
cell line
246
tissue
64
primary cell
Organ
302
liver
121
brain
81
kidney
43
musculature of body
35
heart
32
limb
26
epithelium
18
connective tissue
18
ureter
13
vasculature
8
blood vessel
7
eye
5
pancreas
2
artery
1
adipose tissue
Project
610
AMP
Genome assembly (visualization)
477
GRCh38
453
hg19
Lab
610
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
1
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
month_released!
September, 2017
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
610 results
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Clear Filters
ChIP-seq
DNase-seq
snATAC-seq
cell line
HepG2
300
tissue
layer of hippocampus
22
heart
18
muscle of arm
17
caudate nucleus
15
1
substantia nigra
15
+ See 39 more…
primary cell
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
mesenchymal stem cell
7
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
+ See 17 more…
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