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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
29
total RNA-seq
10
MeRIP-seq
9
ATAC-seq
1
DNase-seq
Assay category
109
DNA binding
29
Transcription
10
DNA accessibility
Target of assay
43
histone
43
histone modification
42
transcription factor
29
control
25
broad histone mark
18
narrow histone mark
5
nucleotide modification
4
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
115
bam
111
fastq
91
bigWig
86
bed narrowPeak
57
bigBed narrowPeak
29
tsv
16
bed bed3+
14
tagAlign
5
bed broadPeak
1
bigBed broadPeak
Organism
158
Homo sapiens
Biosample type
100
tissue
43
in vitro differentiated cells
6
cell line
6
primary cell
3
stem cell
Organ
64
liver
28
brain
25
epithelium
16
pancreas
13
embryo
9
connective tissue
3
adipose tissue
3
blood vessel
3
heart
3
limb
3
vasculature
2
artery
2
musculature of body
1
eye
1
nerve
1
spinal cord
1
spleen
Project
158
AMP
Genome assembly (visualization)
97
GRCh38
96
hg19
Lab
147
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
11
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
11
inconsistent control read length
BIOSAMPLE
ASSAY
158 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
ATAC-seq
DNase-seq
tissue
liver
38
brain
15
right lobe of liver
10
1
body of pancreas
1
4
islet of Langerhans
4
1
+ See 24 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
4
1
1
stem cell
hESC
3
See all biosamples
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