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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
16
snATAC-seq
Assay category
91
DNA binding
16
DNA accessibility
Target of assay
42
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
15
broad histone mark
4
RNA binding protein
chromatin remodeller
Date released
649
February, 2021
408
August, 2017
399
May, 2021
385
November, 2017
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
91
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
33
December, 2018
24
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
91
bam
91
fastq
69
bed narrowPeak
69
bigWig
47
bigBed narrowPeak
15
bed bed3+
Organism
107
Homo sapiens
Biosample type
54
tissue
42
in vitro differentiated cells
8
primary cell
3
stem cell
Organ
60
liver
18
epithelium
13
embryo
8
blood
8
bodily fluid
8
pancreas
Project
91
AMP
16
T1D
Genome assembly (visualization)
74
GRCh38
74
hg19
Lab
91
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
25
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
May, 2023
organ_slims!
vasculature
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ChIP-seq
snATAC-seq
tissue
liver
36
right lobe of liver
10
islet of Langerhans
4
pancreas
4
in vitro differentiated cells
hepatocyte
14
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
primary cell
peripheral blood mononuclear cell
8
stem cell
hESC
3
See all biosamples
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