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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
137
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
106
transcription factor
31
histone
31
histone modification
control
25
RNA binding protein
16
narrow histone mark
16
recombinant protein
15
broad histone mark
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
648
February, 2021
390
May, 2021
361
August, 2017
331
November, 2017
318
May, 2020
301
August, 2021
231
October, 2019
203
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
93
July, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
59
March, 2020
59
November, 2019
59
September, 2020
58
May, 2019
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
22
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
155
fastq
154
bam
152
bigWig
145
bed narrowPeak
123
bigBed narrowPeak
19
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
155
Homo sapiens
Biosample type
59
tissue
58
cell line
35
in vitro differentiated cells
2
stem cell
1
primary cell
Organ
103
liver
16
epithelium
12
blood
12
bodily fluid
9
embryo
7
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
155
AMP
Genome assembly (visualization)
151
GRCh38
143
hg19
Lab
155
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
organ_slims!
gonad
vasculature
target.investigated_as!
control
BIOSAMPLE
ASSAY
155 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
liver
33
2
right lobe of liver
7
1
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
+ See 2 more…
cell line
HepG2
45
1
GM12878
12
in vitro differentiated cells
hepatocyte
14
pancreatic endoderm
7
Posterior foregut
4
definitive endodermal cell
4
primitive gut cell
4
+ See 1 more…
stem cell
hESC
2
primary cell
pancreatic cell
1
See all biosamples
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