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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
3
Hi-C
1
MPRA
Assay category
75
DNA binding
3
3D chromatin structure
Target of assay
42
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
broad histone mark
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
341
May, 2020
319
November, 2017
318
May, 2021
309
August, 2021
294
August, 2017
259
October, 2019
206
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
75
December, 2017
67
November, 2018
64
March, 2020
59
September, 2020
57
May, 2019
56
September, 2018
54
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
39
April, 2019
33
December, 2018
31
February, 2018
25
February, 2020
20
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
15
May, 2024
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
75
bam
75
fastq
53
bed narrowPeak
53
bigWig
36
bigBed narrowPeak
10
bed bed3+
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
78
Homo sapiens
Biosample type
43
tissue
30
in vitro differentiated cells
3
primary cell
2
stem cell
1
cell line
Organ
49
liver
13
epithelium
12
embryo
3
pancreas
Project
76
AMP
3
HPAP
Genome assembly (visualization)
61
hg19
58
GRCh38
Lab
76
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
27
inconsistent control
4
inconsistent ontology term
3
audit script error
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
RNA binding protein
broad histone mark
target.investigated_as!!
broad histone mark
BIOSAMPLE
ASSAY
79 results
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Clear Filters
ChIP-seq
Hi-C
MPRA
tissue
liver
37
right lobe of liver
6
in vitro differentiated cells
pancreatic endoderm
8
hepatocyte
6
Hepatic endoderm
4
Posterior foregut
4
definitive endodermal cell
4
+ See 1 more…
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
stem cell
hESC
2
cell line
MIN6
1
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