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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
40
total RNA-seq
1
Hi-C
Assay category
58
DNA binding
40
Transcription
1
3D chromatin structure
Target of assay
28
transcription factor
16
histone
16
histone modification
12
control
8
broad histone mark
8
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
74
fastq
73
bam
61
bigWig
46
bed narrowPeak
40
tsv
30
bigBed narrowPeak
Organism
99
Homo sapiens
Biosample type
39
in vitro differentiated cells
32
tissue
28
cell line
Organ
27
blood
27
bodily fluid
13
embryo
12
brain
7
spleen
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
liver
2
musculature of body
1
eye
1
nerve
1
pancreas
1
spinal cord
Project
99
AMP
Genome assembly (visualization)
61
GRCh38
61
hg19
Lab
99
AMP-T2D consortium
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
99 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
tissue
spleen
7
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
anterior cingulate cortex
1
+ See 21 more…
cell line
GM12878
27
HepG2
1
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