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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
20
total RNA-seq
1
Hi-C
Assay category
83
DNA binding
20
Transcription
1
3D chromatin structure
Target of assay
42
transcription factor
23
histone
23
histone modification
16
control
12
broad histone mark
11
narrow histone mark
8
RNA binding protein
8
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
104
fastq
103
bam
87
bigWig
67
bed narrowPeak
51
bigBed narrowPeak
20
tsv
Organism
104
Homo sapiens
Biosample type
51
cell line
39
in vitro differentiated cells
14
tissue
Organ
45
blood
45
bodily fluid
14
spleen
13
embryo
6
liver
Project
104
AMP
Genome assembly (visualization)
87
GRCh38
87
hg19
Lab
104
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
2
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
cell line
GM12878
45
HepG2
5
1
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
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tissue
spleen
14
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