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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
84
RNA microarray
36
ChIP-seq
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
1
Hi-C
Assay category
511
Transcription
41
DNA accessibility
36
DNA binding
6
DNA methylation
1
3D chromatin structure
Target of assay
29
transcription factor
5
control
2
RNA binding protein
2
chromatin remodeller
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
266
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
540
bam
525
bigWig
507
tsv
89
txt
80
fastq
41
bed narrowPeak
30
bigBed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
684
Homo sapiens
Biosample type
552
tissue
58
cell line
48
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
27
blood
27
bodily fluid
8
kidney
8
skeleton
7
spleen
6
limb
4
liver
Project
639
AMP
45
HPAP
Genome assembly (visualization)
540
hg19
534
GRCh38
Lab
639
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent control
1
inconsistent replicate
organ_slims!
blood vessel
lymph node
stomach
BIOSAMPLE
ASSAY
684 results
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total RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
Hi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
7
kidney
5
+ See 14 more…
cell line
GM12878
27
EndoC_BH1
26
HepG2
1
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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