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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
34
ChIP-seq
18
small RNA-seq
16
snATAC-seq
15
RRBS
12
WGBS
9
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
34
DNA binding
27
DNA methylation
24
DNA accessibility
9
3D chromatin structure
Target of assay
28
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
116
bam
115
bigWig
65
tsv
37
bed narrowPeak
35
fastq
32
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
159
Homo sapiens
Biosample type
92
tissue
39
primary cell
28
cell line
Organ
35
blood
35
bodily fluid
25
heart
18
brain
18
connective tissue
14
pancreas
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
11
liver
10
musculature of body
7
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
143
AMP
16
T1D
Genome assembly (visualization)
121
hg19
109
GRCh38
Lab
143
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent control
month_released!
May, 2020
BIOSAMPLE
ASSAY
159 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
snATAC-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
spleen
7
islet of Langerhans
4
1
omental fat pad
4
1
pancreas
4
1
+ See 27 more…
primary cell
peripheral blood mononuclear cell
8
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 21 more…
cell line
GM12878
27
HepG2
1
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