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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
97
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
201
DNA accessibility
97
DNA binding
27
Transcription
1
3D chromatin structure
Target of assay
51
histone
51
histone modification
32
transcription factor
26
narrow histone mark
25
broad histone mark
12
control
6
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
January, 2018
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
324
bam
312
bigWig
286
bed narrowPeak
254
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
108
fastq
26
tsv
1
csv
Organism
326
Homo sapiens
Biosample type
170
tissue
128
primary cell
28
cell line
Organ
81
epithelium
81
kidney
76
pancreas
43
musculature of body
35
heart
32
limb
30
brain
27
blood
27
bodily fluid
18
connective tissue
18
ureter
7
eye
7
spleen
7
vasculature
5
blood vessel
3
liver
2
artery
1
adipose tissue
Project
326
AMP
Genome assembly (visualization)
312
GRCh38
289
hg19
Lab
326
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
1
inconsistent control
Audit category:
32
missing controlled_by
month_released!
August, 2020
January, 2018
BIOSAMPLE
ASSAY
326 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 23 more…
cell line
GM12878
27
HepG2
1
See all biosamples
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