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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
4
ATAC-seq
2
Hi-C
2
total RNA-seq
Assay category
85
DNA binding
4
DNA accessibility
2
3D chromatin structure
2
Transcription
Target of assay
38
transcription factor
30
histone
30
histone modification
19
broad histone mark
15
control
11
narrow histone mark
8
RNA binding protein
2
chromatin remodeller
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
88
bam
73
fastq
72
bigWig
70
bed narrowPeak
70
bigBed narrowPeak
2
tsv
1
bed broadPeak
1
bedpe
1
hic
Organism
93
Homo sapiens
Biosample type
63
tissue
28
cell line
2
primary cell
Organ
58
pancreas
27
blood
27
bodily fluid
23
adipose tissue
connective tissue
7
spleen
2
epithelium
1
liver
Project
93
AMP
Genome assembly (visualization)
75
hg19
74
GRCh38
Lab
88
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
inconsistent control
Audit category:
1
inconsistent control read length
month_released!
February, 2021
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
93 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
tissue
body of pancreas
33
endocrine pancreas
16
spleen
7
islet of Langerhans
4
1
pancreas
2
cell line
GM12878
27
HepG2
1
primary cell
pancreatic acinar cell
2
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