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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
25
ATAC-seq
20
total RNA-seq
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
47
DNA binding
25
DNA accessibility
24
Transcription
4
3D chromatin structure
Target of assay
29
transcription factor
10
histone
10
histone modification
6
broad histone mark
6
control
4
narrow histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
92
bam
66
bed narrowPeak
61
bigWig
35
fastq
30
bigBed narrowPeak
20
tsv
3
hic
2
bedpe bed3+
Organism
96
Homo sapiens
Biosample type
46
cell line
46
tissue
5
in vitro differentiated cells
2
stem cell
1
primary cell
Organ
55
pancreas
27
blood
27
bodily fluid
16
epithelium
7
spleen
1
adipose tissue
connective tissue
1
liver
Project
95
AMP
4
community
1
ITG
Genome assembly (visualization)
88
hg19
87
GRCh38
Lab
95
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
21
inconsistent ontology term
1
inconsistent control
month_released!
July, 2018
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
cell line
GM12878
27
EndoC_BH1
13
1
1
1
EndoC-BH1
1
1
HepG2
1
tissue
islet of Langerhans
19
19
1
spleen
7
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
stem cell
SB Ad3.1
1
1
primary cell
chondrocytes
1
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