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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
ChIP-seq
33
single cell RNA-seq
26
total RNA-seq
21
snATAC-seq
4
Hi-C
1
MPRA
Assay category
98
DNA accessibility
59
Transcription
41
DNA methylation
34
DNA binding
4
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
68
bed narrowPeak
59
fastq
58
bam
50
bigWig
30
bigBed narrowPeak
7
txt
3
bedpe bed3+
3
cool
3
hic
Organism
236
Homo sapiens
Biosample type
137
primary cell
71
tissue
29
cell line
Organ
107
pancreas
83
epithelium
41
liver
27
blood
27
bodily fluid
7
spleen
musculature of body
Project
137
HPAP
100
AMP
Genome assembly (visualization)
71
hg19
30
GRCh38
Lab
137
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
36
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
3
audit script error
1
inconsistent control
month_released!
February, 2023
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
237 results
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Clear Filters
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
Hi-C
MPRA
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
pancreatic acinar cell
4
1
tissue
liver
20
20
islet of Langerhans
18
6
spleen
7
cell line
GM12878
27
HepG2
1
MIN6
1
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