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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
1
Hi-C
Assay category
74
DNA binding
56
Transcription
3
DNA accessibility
1
3D chromatin structure
Target of assay
35
histone
35
histone modification
33
transcription factor
20
broad histone mark
15
narrow histone mark
7
RNA binding protein
4
control
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
76
fastq
73
bigWig
70
bed narrowPeak
34
bam
30
bigBed narrowPeak
19
zippedFastqFolder
Organism
134
Homo sapiens
Biosample type
59
primary cell
47
tissue
28
cell line
Organ
40
heart
27
blood
27
bodily fluid
19
epithelium
19
pancreas
7
spleen
1
liver
Project
75
AMP
59
HPAP
Genome assembly (visualization)
73
GRCh38
30
hg19
Lab
59
Klaus Kaestner, Upenn
40
Patrick T. Ellinor, Broad
35
AMP-T2D consortium
Audit category:
1
inconsistent control
month_released!
May, 2020
BIOSAMPLE
ASSAY
134 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
tissue
left cardiac atrium
40
spleen
7
cell line
GM12878
27
HepG2
1
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