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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
10
MeRIP-seq
6
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
108
DNA binding
6
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
43
transcription factor
38
control
30
histone
30
histone modification
19
broad histone mark
13
RNA binding protein
11
narrow histone mark
5
nucleotide modification
2
chromatin remodeller
Date released
649
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
317
August, 2021
287
October, 2019
216
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
115
May, 2019
105
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
116
bam
95
fastq
82
bigWig
77
bed narrowPeak
76
bigBed narrowPeak
6
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
127
Homo sapiens
Biosample type
85
tissue
34
cell line
8
primary cell
Organ
63
pancreas
29
connective tissue
27
blood
27
bodily fluid
23
adipose tissue
8
epithelium
7
spleen
1
liver
Project
127
AMP
Genome assembly (visualization)
83
GRCh38
83
hg19
Lab
117
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent control read length
organ_slims!
artery
lymph node
BIOSAMPLE
ASSAY
127 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
spleen
7
+ See 2 more…
cell line
GM12878
27
EndoC_BH1
6
HepG2
1
primary cell
osteoblast
4
1
1
pancreatic acinar cell
2
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