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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
101
ChIP-seq
7
WGBS
5
total RNA-seq
4
ATAC-seq
4
single cell RNA-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
Assay category
201
DNA accessibility
101
DNA binding
9
Transcription
7
DNA methylation
1
3D chromatin structure
Target of assay
68
transcription factor
25
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
14
control
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
200
May, 2022
197
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
311
bam
295
bigWig
283
bed narrowPeak
283
bigBed narrowPeak
197
bed broadPeak
196
bed bed3+
196
bigBed broadPeak
89
fastq
9
tsv
7
bed bedMethyl
7
bigBed bedMethyl
1
bedpe
1
csv
1
hic
Organism
321
Homo sapiens
Biosample type
197
tissue
61
cell line
61
primary cell
2
in vitro differentiated cells
Organ
84
kidney
60
liver
43
musculature of body
35
heart
32
brain
32
limb
26
epithelium
19
connective tissue
18
ureter
16
pancreas
15
blood
15
bodily fluid
9
spleen
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
321
AMP
Genome assembly (visualization)
296
GRCh38
266
hg19
Lab
316
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
4
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
skeleton
BIOSAMPLE
ASSAY
321 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
FAIRE-seq
Hi-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 40 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
hepatocyte
1
5
cardiac muscle cell
1
3
+ See 18 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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