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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ATAC-seq
41
WGBS
37
single cell RNA-seq
31
total RNA-seq
22
snATAC-seq
6
ChIP-seq
2
RNA microarray
Assay category
104
DNA accessibility
68
Transcription
41
DNA methylation
6
DNA binding
Target of assay
6
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
43
bed narrowPeak
40
bam
35
fastq
30
bigWig
9
tsv
7
txt
5
bigBed narrowPeak
3
bed bed3+
Organism
221
Homo sapiens
Biosample type
144
primary cell
75
tissue
2
in vitro differentiated cells
Organ
115
pancreas
91
epithelium
45
liver
3
kidney
2
musculature of body
Project
134
HPAP
87
AMP
Genome assembly (visualization)
51
hg19
12
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
23
AMP-T2D consortium
Audit category:
5
audit script error
2
inconsistent ontology term
month_released!
May, 2023
September, 2018
BIOSAMPLE
ASSAY
221 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
RNA microarray
primary cell
Langerhans cell
33
21
pancreatic alpha cell
24
25
pancreatic beta cell
15
16
hepatocyte
5
pancreatic acinar cell
5
tissue
liver
20
20
islet of Langerhans
18
6
6
skeletal muscle tissue
1
1
kidney
1
kidney interstitium
1
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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