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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
11
total RNA-seq
4
ATAC-seq
1
Hi-C
Assay category
15
DNA binding
11
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
5
broad histone mark
5
control
5
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
314
October, 2019
311
August, 2021
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
81
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
26
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
27
bam
27
fastq
21
bigWig
11
tsv
10
bed narrowPeak
1
bed broadPeak
1
bedpe
1
hic
Organism
31
Homo sapiens
Biosample type
26
in vitro differentiated cells
5
tissue
Organ
embryo
5
pancreas
Project
31
AMP
Genome assembly (visualization)
24
hg19
23
GRCh38
Lab
26
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
2
inconsistent control read length
organ_slims!
bone marrow
embryo
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
in vitro differentiated cells
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
primitive gut cell
3
2
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tissue
islet of Langerhans
4
1
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