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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
15
total RNA-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
65
DNA binding
16
Transcription
10
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
RNA binding protein
16
histone
16
histone modification
16
recombinant protein
14
control
broad histone mark
8
narrow histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
341
May, 2020
319
November, 2017
318
May, 2021
309
August, 2021
294
August, 2017
259
October, 2019
206
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
75
December, 2017
67
November, 2018
64
March, 2020
59
September, 2020
57
May, 2019
56
September, 2018
54
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
39
April, 2019
33
December, 2018
31
February, 2018
25
February, 2020
20
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
15
May, 2024
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
98
fastq
97
bam
82
bigWig
60
bed narrowPeak
52
bigBed narrowPeak
15
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
98
Homo sapiens
Biosample type
40
cell line
31
in vitro differentiated cells
26
tissue
1
primary cell
Organ
34
liver
13
blood
13
bodily fluid
10
embryo
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
98
AMP
Genome assembly (visualization)
81
GRCh38
73
hg19
Lab
98
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
3
inconsistent control run_type
target.investigated_as!
RNA binding protein
broad histone mark
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
26
1
GM12878
13
in vitro differentiated cells
pancreatic endoderm
6
4
definitive endodermal cell
2
2
embryonic stem cell
2
2
endocrine cell
2
2
posterior foregut
2
2
+ See 2 more…
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
pancreatic cell
1
See all biosamples
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