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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
total RNA-seq
10
MeRIP-seq
8
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
19
Transcription
8
DNA binding
2
DNA accessibility
Target of assay
histone
16
histone modification
13
control
8
broad histone mark
8
narrow histone mark
5
nucleotide modification
Date released
712
February, 2021
270
August, 2021
259
May, 2021
205
February, 2023
197
June, 2019
191
August, 2017
168
July, 2018
160
May, 2022
147
May, 2020
116
October, 2019
98
July, 2019
59
September, 2020
58
March, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
November, 2018
34
December, 2018
28
May, 2019
24
February, 2020
23
February, 2018
20
April, 2019
19
April, 2020
18
January, 2019
18
November, 2017
17
December, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
29
bam
23
fastq
20
bigWig
19
tsv
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
39
Homo sapiens
Biosample type
23
in vitro differentiated cells
6
cell line
6
primary cell
4
tissue
Organ
10
pancreas
7
embryo
6
connective tissue
6
epithelium
Project
39
AMP
Genome assembly (visualization)
21
GRCh38
21
hg19
Lab
29
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
liver
target.investigated_as!
histone
BIOSAMPLE
ASSAY
39 results
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Clear Filters
total RNA-seq
MeRIP-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
pancreatic endoderm
4
3
definitive endodermal cell
2
1
embryonic stem cell
2
1
endocrine cell
2
1
posterior foregut
2
1
+ See 2 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
4
1
1
tissue
islet of Langerhans
4
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