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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
31
total RNA-seq
16
ChIP-seq
3
ATAC-seq
Assay category
71
Transcription
16
DNA binding
3
DNA accessibility
Target of assay
16
histone
16
histone modification
broad histone mark
8
control
8
narrow histone mark
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
79
December, 2017
73
November, 2018
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
31
February, 2018
25
February, 2020
20
May, 2024
19
April, 2020
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2019
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
72
fastq
31
bam
26
bigWig
19
zippedFastqFolder
15
tsv
8
bed narrowPeak
Organism
90
Homo sapiens
Biosample type
59
primary cell
31
in vitro differentiated cells
Organ
19
epithelium
19
pancreas
10
embryo
Project
59
HPAP
31
AMP
Genome assembly (visualization)
26
GRCh38
23
hg19
Lab
59
Klaus Kaestner, Upenn
31
AMP-T2D consortium
Audit category:
1
inconsistent control read length
month_released!
November, 2019
organ_slims!
bodily fluid
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
90 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
in vitro differentiated cells
pancreatic endoderm
4
6
definitive endodermal cell
2
2
embryonic stem cell
2
2
endocrine cell
2
2
posterior foregut
2
2
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