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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
14
RRBS
12
small RNA-seq
11
WGBS
7
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
68
Transcription
25
DNA methylation
8
DNA accessibility
7
3D chromatin structure
Target of assay
3
control
Date released
399
May, 2021
326
February, 2021
306
October, 2019
300
August, 2017
283
August, 2021
215
June, 2019
204
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
91
November, 2017
86
July, 2019
80
April, 2019
73
September, 2018
60
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
34
November, 2018
31
December, 2017
25
January, 2019
22
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
September, 2017
7
August, 2020
7
January, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
68
tsv
65
bigWig
63
bam
22
bed bedMethyl
22
bigBed bedMethyl
7
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
108
Homo sapiens
Biosample type
81
tissue
27
primary cell
Organ
30
brain
28
heart
20
connective tissue
15
vasculature
adipose tissue
14
blood vessel
13
epithelium
12
musculature of body
11
kidney
liver
8
limb
7
pancreas
5
artery
2
eye
2
pericardium
1
nerve
1
spinal cord
Project
108
AMP
Genome assembly (visualization)
70
hg19
60
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
September, 2017
organ_slims!
adipose tissue
liver
BIOSAMPLE
ASSAY
108 results
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total RNA-seq
RRBS
small RNA-seq
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
body of pancreas
3
2
gastrocnemius medialis
1
4
frontal cortex
2
1
1
heart
2
1
1
+ See 36 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 17 more…
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