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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
12
ChIP-seq
6
DNase-seq
3
small RNA-seq
1
Hi-C
1
RRBS
Assay category
18
Transcription
12
DNA binding
6
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
455
February, 2021
125
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
14
February, 2023
6
November, 2020
5
August, 2021
4
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
34
bam
32
bigWig
18
tsv
15
bed narrowPeak
15
bigBed narrowPeak
7
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
38
Homo sapiens
Biosample type
25
primary cell
13
tissue
Organ
92
kidney
63
heart
60
brain
55
musculature of body
40
limb
38
connective tissue
33
epithelium
22
vasculature
19
blood vessel
18
ureter
15
adipose tissue
13
liver
11
pancreas
9
eye
7
artery
2
pericardium
1
nerve
1
spinal cord
Project
38
AMP
Genome assembly (visualization)
32
hg19
31
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
BIOSAMPLE
ASSAY
38 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
small RNA-seq
Hi-C
RRBS
primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
cardiac atrium fibroblast
1
+ See 4 more…
tissue
omental fat pad
5
1
1
subcutaneous adipose tissue
5
1
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