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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
166
ChIP-seq
25
total RNA-seq
8
ATAC-seq
Assay category
195
DNA accessibility
166
DNA binding
25
Transcription
Target of assay
123
histone
123
histone modification
76
broad histone mark
47
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
310
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
353
bam
321
bigWig
319
bed narrowPeak
313
bigBed narrowPeak
191
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
25
tsv
17
fastq
14
tagAlign
Organism
386
Homo sapiens
Biosample type
326
tissue
60
primary cell
Organ
86
brain
86
kidney
60
vasculature
59
heart
58
blood vessel
52
musculature of body
42
limb
25
epithelium
21
connective tissue
18
ureter
12
pancreas
9
artery
8
eye
4
adipose tissue
3
liver
1
nerve
1
spinal cord
1
spleen
Project
386
AMP
Genome assembly (visualization)
320
GRCh38
297
hg19
Lab
385
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
30
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
ovary
BIOSAMPLE
ASSAY
386 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
tissue
brain
12
15
muscle of leg
13
7
ascending aorta
1
16
1
heart
18
muscle of arm
17
+ See 56 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
kidney epithelial cell
1
5
cardiac muscle cell
1
3
+ See 17 more…
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