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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
42
ChIP-seq
25
total RNA-seq
8
ATAC-seq
Assay category
195
DNA accessibility
42
DNA binding
25
Transcription
Target of assay
31
histone
31
histone modification
18
broad histone mark
13
narrow histone mark
11
control
4
RNA binding protein
transcription factor
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
303
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
63
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
229
bam
220
bigWig
218
bed narrowPeak
212
bigBed narrowPeak
191
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
25
tsv
17
fastq
14
tagAlign
Organism
262
Homo sapiens
Biosample type
211
tissue
51
primary cell
Organ
80
kidney
58
brain
45
musculature of body
37
heart
35
limb
20
connective tissue
18
epithelium
18
ureter
10
pancreas
10
vasculature
8
blood vessel
7
eye
4
adipose tissue
4
artery
3
liver
1
nerve
1
spinal cord
1
spleen
Project
262
AMP
Genome assembly (visualization)
220
GRCh38
196
hg19
Lab
261
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
25
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
ovary
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
262 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
tissue
brain
12
15
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 50 more…
primary cell
skeletal muscle satellite cell
8
cardiac fibroblast
3
4
mesenchymal stem cell
7
cardiac muscle cell
1
2
epithelial cell of proximal tubule
1
2
+ See 17 more…
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