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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
454
ChIP-seq
212
total RNA-seq
100
ATAC-seq
1
pCHi-C
Assay category
454
DNA binding
212
Transcription
100
DNA accessibility
Target of assay
244
transcription factor
115
histone
115
histone modification
94
control
66
recombinant protein
65
narrow histone mark
50
broad histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
other post-translational modification
Date released
709
February, 2021
411
August, 2017
404
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
245
October, 2019
205
February, 2023
200
May, 2022
186
June, 2019
168
July, 2018
113
May, 2019
103
July, 2019
94
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
673
bam
592
bigWig
338
bed narrowPeak
322
fastq
310
bigBed narrowPeak
211
tsv
128
tagAlign
69
bed broadPeak
63
bigBed broadPeak
3
tar
Organism
767
Homo sapiens
Biosample type
314
cell line
297
tissue
156
primary cell
Organ
508
liver
103
brain
9
vasculature
6
blood vessel
6
epithelium
3
heart
limb
2
adipose tissue
2
artery
2
connective tissue
2
musculature of body
1
eye
1
nerve
1
pancreas
1
spinal cord
Project
722
AMP
45
T1D
Genome assembly (visualization)
539
hg19
485
GRCh38
Lab
722
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
limb
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
767 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
cell line
HepG2
313
1
tissue
liver
50
143
layer of hippocampus
22
caudate nucleus
15
1
substantia nigra
15
1
cingulate gyrus
14
+ See 21 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
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