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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
47
ChIP-seq
22
ATAC-seq
1
single cell RNA-seq
Assay category
50
Transcription
47
DNA binding
22
DNA accessibility
Target of assay
44
histone
44
histone modification
27
broad histone mark
17
narrow histone mark
3
control
Date released
715
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
205
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
90
fastq
87
bam
86
bigWig
58
bed narrowPeak
49
tsv
20
bigBed narrowPeak
14
tagAlign
4
bed broadPeak
1
csv
Organism
119
Homo sapiens
Biosample type
73
primary cell
46
tissue
Organ
78
pancreas
61
epithelium
28
brain
3
adipose tissue
3
blood vessel
3
connective tissue
3
heart
3
limb
3
vasculature
2
artery
musculature of body
1
eye
1
liver
1
nerve
1
spinal cord
1
spleen
Project
119
AMP
Genome assembly (visualization)
86
GRCh38
85
hg19
Lab
118
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
36
missing controlled_by
month_released!
December, 2019
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
119 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 1 more…
tissue
brain
15
body of pancreas
1
4
cerebellum (Hemisphere)
1
1
omental fat pad
1
1
Ammon's horn
1
+ See 21 more…
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