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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
4
DNase-seq
2
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
40
DNA binding
6
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
33
histone
33
histone modification
23
broad histone mark
10
narrow histone mark
7
control
Date released
47
October, 2019
45
May, 2019
9
July, 2019
6
August, 2021
6
November, 2017
5
June, 2019
4
March, 2020
2
February, 2020
Available data
46
bam
36
bigWig
34
bed narrowPeak
33
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
bed bed3+
2
tsv
1
hic
1
tar
Organism
49
Homo sapiens
Biosample type
28
tissue
21
primary cell
Organ
98
brain
72
limb
50
blood vessel
50
vasculature
43
nerve
35
epithelium
30
kidney
28
artery
22
eye
21
vein
19
pancreas
heart
8
liver
6
connective tissue
4
gonad
4
ovary
3
adipose tissue
2
musculature of body
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
49
AMP
Genome assembly (visualization)
37
hg19
33
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
December, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
tissue
tibial artery
23
2
1
1
ascending aorta
1
primary cell
endothelial cell of umbilical vein
17
2
1
1
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