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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
133
total RNA-seq
84
RNA microarray
67
ATAC-seq
29
snATAC-seq
21
ChIP-seq
19
single cell RNA-seq
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
272
DNA accessibility
152
Transcription
21
DNA binding
6
DNA methylation
Target of assay
11
histone
11
histone modification
7
narrow histone mark
6
control
4
broad histone mark
4
transcription factor
3
RNA binding protein
Date released
403
November, 2017
397
May, 2021
341
May, 2020
308
August, 2021
286
August, 2017
263
October, 2019
200
May, 2022
195
June, 2019
194
February, 2021
166
July, 2018
156
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
79
July, 2019
73
September, 2018
70
May, 2019
60
November, 2019
59
September, 2020
58
March, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
22
October, 2017
20
February, 2020
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
250
bam
238
bigWig
229
bed narrowPeak
190
bigBed narrowPeak
177
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
121
fastq
96
txt
74
tsv
6
bed bed3
6
csv
3
bed bedgraph
2
tagAlign
Organism
544
Homo sapiens
Biosample type
319
tissue
169
primary cell
36
cell line
21
in vitro differentiated cells
Organ
connective tissue
388
adipose tissue
158
bone element
137
heart
108
vasculature
blood vessel
104
epithelium
103
artery
92
pancreas
89
kidney
43
musculature of body
38
eye
38
limb
31
brain
18
ureter
16
skeleton
5
liver
Project
401
AMP
121
HPAP
23
T1D
Genome assembly (visualization)
259
hg19
244
GRCh38
Lab
398
AMP-T2D consortium
121
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
149
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
blood vessel
connective tissue
BIOSAMPLE
ASSAY
545 results
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Clear Filters
DNase-seq
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
bone element
84
retina
3
2
15
heart
18
1
islet of Langerhans
5
11
2
kidney
13
5
+ See 50 more…
primary cell
Langerhans cell
27
12
exocrine cell
39
pancreatic alpha cell
27
6
pancreatic beta cell
10
skeletal muscle satellite cell
8
+ See 19 more…
cell line
EndoC_BH1
26
3
2
1
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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