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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
561
total RNA-seq
84
RNA microarray
58
single cell RNA-seq
28
ATAC-seq
27
snATAC-seq
8
ChIP-seq
6
WGBS
5
GRO-seq
3
snDrop-seq
2
pCHi-C
Assay category
619
Transcription
55
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
572
bam
562
bigWig
559
tsv
91
fastq
89
txt
23
bed narrowPeak
19
zippedFastqFolder
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
782
Homo sapiens
Biosample type
547
tissue
107
primary cell
97
cell line
30
in vitro differentiated cells
1
stem cell
Organ
456
connective tissue
387
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
51
epithelium
51
pancreas
8
kidney
8
skeleton
6
limb
3
liver
1
blood
1
bodily fluid
1
embryo
1
musculature of body
Project
678
AMP
104
HPAP
Genome assembly (visualization)
577
hg19
571
GRCh38
5
hg18
Lab
678
AMP-T2D consortium
104
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
782 results
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Clear Filters
total RNA-seq
RNA microarray
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
GRO-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 14 more…
primary cell
Langerhans cell
52
27
pancreatic alpha cell
15
2
6
osteoblast
1
1
1
pancreatic beta cell
1
1
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
GM12878
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
+ See 1 more…
stem cell
hESC
1
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