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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
total RNA-seq
84
RNA microarray
43
snATAC-seq
34
pCHi-C
26
ATAC-seq
18
single cell RNA-seq
11
ChIP-seq
10
Hi-C
6
WGBS
3
snDrop-seq
Assay category
578
Transcription
69
DNA accessibility
11
DNA binding
10
3D chromatin structure
6
DNA methylation
Target of assay
5
transcription factor
3
control
3
histone
3
histone modification
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
604
tsv
588
bam
571
bigWig
89
txt
45
fastq
26
bed narrowPeak
12
bedpe bed3+
10
hic
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
ibed
Organism
795
Homo sapiens
Biosample type
593
tissue
107
cell line
57
primary cell
34
in vitro differentiated cells
4
stem cell
Organ
457
connective tissue
387
adipose tissue
150
bone element
73
heart
70
blood vessel
70
vasculature
66
artery
54
pancreas
38
epithelium
10
kidney
8
blood
8
bodily fluid
8
skeleton
6
limb
6
liver
5
musculature of body
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
727
AMP
45
HPAP
23
T1D
Genome assembly (visualization)
606
hg19
584
GRCh38
Lab
734
AMP-T2D consortium
45
Klaus Kaestner, Upenn
16
Kyle Gaulton, UCSD
Audit category:
145
inconsistent ontology term
32
audit script error
1
inconsistent replicate
month_released!
April, 2018
September, 2018
BIOSAMPLE
ASSAY
795 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
ATAC-seq
single cell RNA-seq
ChIP-seq
Hi-C
WGBS
snDrop-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
2
4
2
2
pancreas
1
4
1
1
+ See 32 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
28
2
1
HepG2
1
1
early embryonic cell
2
iPSC derived cell line
2
+ See 4 more…
primary cell
Langerhans cell
27
12
peripheral blood mononuclear cell
8
pancreatic alpha cell
6
osteoblast
1
1
1
endothelial cell of umbilical vein
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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