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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
774
total RNA-seq
128
ATAC-seq
84
RNA microarray
58
ChIP-seq
27
snATAC-seq
18
WGBS
17
small RNA-seq
16
single cell RNA-seq
11
RRBS
8
Hi-C
3
pCHi-C
1
FAIRE-seq
Assay category
807
Transcription
156
DNA accessibility
58
DNA binding
29
DNA methylation
8
3D chromatin structure
Target of assay
29
control
27
histone
27
histone modification
27
narrow histone mark
5
transcription factor
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
930
bam
889
bigWig
799
tsv
84
txt
58
tagAlign
56
bed narrowPeak
45
fastq
19
bed bedMethyl
19
bigBed bedMethyl
6
bed bed3+
4
bed bedgraph
4
hdf5
2
bed bed3
1
bigBed narrowPeak
1
csv
Organism
1145
Homo sapiens
Biosample type
803
tissue
219
primary cell
97
cell line
26
in vitro differentiated cells
Organ
473
connective tissue
398
adipose tissue
207
liver
150
bone element
91
heart
78
vasculature
77
blood vessel
69
artery
45
epithelium
38
pancreas
kidney
18
brain
11
limb
10
musculature of body
8
skeleton
2
pericardium
1
eye
Project
1055
AMP
45
HPAP
45
T1D
Genome assembly (visualization)
914
hg19
848
GRCh38
Lab
1055
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
137
inconsistent ontology term
27
audit script error
1
inconsistent replicate
organ_slims!
kidney
BIOSAMPLE
ASSAY
1145 results
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total RNA-seq
ATAC-seq
RNA microarray
ChIP-seq
snATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
tissue
adipose tissue
381
liver
145
50
1
1
bone element
84
bone tissue
58
heart left ventricle
2
2
4
1
+ See 36 more…
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
6
+ See 48 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
2
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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