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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
637
total RNA-seq
194
ChIP-seq
173
DNase-seq
32
ATAC-seq
27
snATAC-seq
18
pCHi-C
18
single cell RNA-seq
3
snDrop-seq
1
DNAme array
Assay category
655
Transcription
232
DNA accessibility
194
DNA binding
1
DNA methylation
Target of assay
155
histone
155
histone modification
84
broad histone mark
71
narrow histone mark
22
transcription factor
17
control
7
RNA binding protein
Date released
533
February, 2021
400
November, 2017
382
August, 2017
372
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
145
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
953
bigWig
945
bam
636
tsv
337
bed narrowPeak
192
bigBed narrowPeak
177
bed bed3+
173
bed broadPeak
173
bigBed broadPeak
95
tagAlign
39
fastq
6
csv
5
txt
4
bed bedgraph
2
bed bed3
Organism
1103
Homo sapiens
Biosample type
598
tissue
282
primary cell
153
in vitro differentiated cells
70
cell line
Organ
475
connective tissue
387
adipose tissue
bone element
104
heart
97
pancreas
89
kidney
epithelium
73
vasculature
71
blood vessel
68
artery
43
musculature of body
38
limb
30
brain
18
ureter
8
skeleton
7
eye
5
liver
2
embryo
1
bone marrow
1
thymus
Project
913
AMP
151
T1D
39
HPAP
Genome assembly (visualization)
964
hg19
935
GRCh38
Lab
830
AMP-T2D consortium
234
Kyle Gaulton, UCSD
39
Klaus Kaestner, Upenn
Audit category:
108
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
bone element
epithelium
BIOSAMPLE
ASSAY
1103 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
snDrop-seq
DNAme array
tissue
adipose tissue
381
islet of Langerhans
36
heart
18
kidney
13
5
muscle of arm
17
+ See 45 more…
primary cell
monocyte
52
85
13
1
1
Langerhans cell
27
12
CD8-positive, alpha-beta T cell
2
33
1
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
+ See 22 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
cardiac precursors (cardiac muscle cell)
18
induced pluripotent stem cell
9
adipocyte
4
4
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
HepG2
1
1
iPSC derived cell line
2
See all biosamples
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