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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
735
total RNA-seq
122
ATAC-seq
84
RNA microarray
58
ChIP-seq
27
snATAC-seq
13
single cell RNA-seq
6
WGBS
3
pCHi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
752
Transcription
149
DNA accessibility
58
DNA binding
6
DNA methylation
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
5
transcription factor
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
855
bam
811
bigWig
740
tsv
84
txt
58
tagAlign
50
bed narrowPeak
45
fastq
4
bed bedgraph
2
bed bed3
2
bed bed3+
1
csv
1
hic
Organism
1049
Homo sapiens
Biosample type
730
tissue
196
primary cell
99
cell line
26
in vitro differentiated cells
2
stem cell
Organ
455
connective tissue
386
adipose tissue
197
liver
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
kidney
8
skeleton
6
limb
Project
958
AMP
45
HPAP
45
T1D
4
community
1
ITG
Genome assembly (visualization)
834
hg19
776
GRCh38
Lab
958
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
136
inconsistent ontology term
27
audit script error
1
inconsistent replicate
organ_slims!
kidney
BIOSAMPLE
ASSAY
1053 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
pCHi-C
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue
381
liver
143
50
1
bone element
84
bone tissue
58
visceral abdominal adipose tissue
3
+ See 9 more…
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
6
+ See 28 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
2
EndoC-BH1
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
stem cell
SB Ad3.1
1
1
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