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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
27
ChIP-seq
14
ATAC-seq
6
WGBS
Assay category
52
Transcription
27
DNA binding
14
DNA accessibility
6
DNA methylation
Target of assay
23
histone
23
histone modification
13
narrow histone mark
10
broad histone mark
2
RNA binding protein
2
control
2
transcription factor
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
93
bam
93
bigWig
73
fastq
58
tsv
39
bed narrowPeak
18
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
Organism
99
Homo sapiens
Biosample type
73
primary cell
26
cell line
Organ
455
connective tissue
386
adipose tissue
318
liver
150
bone element
104
pancreas
99
epithelium
91
brain
72
vasculature
69
blood vessel
66
artery
66
heart
8
kidney
8
skeleton
6
limb
Project
93
AMP
6
HPAP
Genome assembly (visualization)
93
hg19
91
GRCh38
Lab
93
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
26
inconsistent ontology term
Audit category:
21
missing controlled_by
BIOSAMPLE
ASSAY
99 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
pancreatic ductal cell
4
13
4
pancreatic alpha cell
10
3
6
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
brain microvascular endothelial cell
3
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cell line
EndoC_BH1
26
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