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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
53
total RNA-seq
10
ATAC-seq
4
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
130
DNA binding
53
Transcription
15
DNA accessibility
1
3D chromatin structure
Target of assay
110
histone
110
histone modification
84
narrow histone mark
26
broad histone mark
16
control
4
transcription factor
Date released
133
October, 2019
91
November, 2017
78
May, 2019
66
February, 2021
36
February, 2023
35
June, 2019
28
July, 2019
16
October, 2017
15
February, 2020
6
August, 2021
6
March, 2020
2
November, 2018
Available data
195
bam
168
bigWig
121
bed narrowPeak
53
tsv
44
tagAlign
33
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
bed bed3+
1
hic
1
tagAlign bed3+
1
tar
Organism
199
Homo sapiens
Biosample type
112
tissue
66
cell line
21
primary cell
Organ
459
connective tissue
387
adipose tissue
150
bone element
113
blood vessel
113
vasculature
92
artery
86
brain
75
limb
74
heart
67
epithelium
50
pancreas
42
nerve
31
kidney
21
eye
21
vein
10
liver
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
199
AMP
Genome assembly (visualization)
179
hg19
175
GRCh38
Lab
199
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
Hi-C
tissue
tibial artery
23
1
2
brain
5
1
superior frontal gyrus
4
central medial thalamic nucleus
3
angular gyrus
2
+ See 61 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
1
1
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