Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
21
ChIP-seq
14
ATAC-seq
6
WGBS
3
Hi-C
Assay category
52
Transcription
21
DNA binding
14
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
87
bam
87
bigWig
67
fastq
58
tsv
35
bed narrowPeak
14
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
96
Homo sapiens
Biosample type
70
primary cell
26
cell line
Organ
455
connective tissue
386
adipose tissue
150
bone element
107
pancreas
96
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
8
kidney
8
skeleton
6
limb
3
liver
Project
87
AMP
9
HPAP
Genome assembly (visualization)
90
hg19
87
GRCh38
Lab
87
AMP-T2D consortium
9
Klaus Kaestner, Upenn
Audit category:
26
inconsistent ontology term
3
audit script error
Audit category:
21
missing controlled_by
BIOSAMPLE
ASSAY
96 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
primary cell
pancreatic ductal cell
4
13
4
pancreatic alpha cell
10
3
6
1
pancreatic beta cell
10
4
1
pancreatic acinar cell
2
8
3
1
cell line
EndoC_BH1
26
Download