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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 493total RNA-seq
  • 84RNA microarray
  • 27snATAC-seq
  • 18single cell RNA-seq
  • 14ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2ChIP-seq
  • 2pCHi-C
Assay category
  • 511Transcription
  • 41DNA accessibility
  • 6DNA methylation
  • 2DNA binding
Target of assay
  • 1control
  • 1transcription factor
Date released
  • 649February, 2021
  • 411August, 2017
  • 403November, 2017
  • 399May, 2021
  • 341May, 2020
  • 313August, 2021
  • 267October, 2019
  • 213June, 2019
  • 200May, 2022
  • 170February, 2023
  • 168July, 2018
  • 97July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 70May, 2019
  • 61November, 2019
  • 60March, 2020
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 23October, 2017
  • 22February, 2020
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
  • 1July, 2025
Available data
  • 507tsv
  • 506bam
  • 495bigWig
  • 89txt
  • 39fastq
  • 11bed narrowPeak
  • 6csv
  • 4bed bedgraph
  • 2bed bed3
  • 2bed bed3+
  • 2tagAlign
Organism
  • 649Homo sapiens
Biosample type
  • 545tissue
  • 48primary cell
  • 30cell line
  • 26in vitro differentiated cells
Organ
  • 455connective tissue
  • 386adipose tissue
  • 150bone element
  • 66artery
  • blood vessel
  • 66heart
  • 66vasculature
  • 32pancreas
  • 26epithelium
  • 8kidney
  • 8skeleton
  • 6limb
  • 3liver
Project
  • 604AMP
  • 45HPAP
Genome assembly (visualization)
  • 510hg19
  • 504GRCh38
Lab
  • 604AMP-T2D consortium
  • 45Klaus Kaestner, Upenn
Audit category:
  • 128inconsistent ontology term
  • 32audit script error
  • 1inconsistent replicate
organ_slims!
  • blood vessel
BIOSAMPLE
ASSAY

649 results

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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
ChIP-seq
pCHi-C
tissue
adipose tissue381
bone element84
bone tissue58
kidney5
visceral abdominal adipose tissue3
subcutaneous adipose tissue2
distal epiphysis1
distal epiphysis of femur1
distal epiphysis of humerus1
distal epiphysis of tibia1
kidney (Cortex-Medulla)1
kidney (cortex)1
kidney (medulla)1
liver1
proximal epiphysis1
proximal epiphysis of femur1
proximal epiphysis of humerus1
proximal epiphysis of tibia1
primary cell
Langerhans cell2712
pancreatic alpha cell6
osteoblast111
cell line
EndoC_BH126
HepG211
iPSC derived cell line2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)18
adipocyte44
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