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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
487
total RNA-seq
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
505
Transcription
41
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
565
February, 2021
411
August, 2017
406
November, 2017
398
May, 2021
341
May, 2020
319
August, 2021
244
October, 2019
200
May, 2022
197
February, 2023
186
June, 2019
168
July, 2018
113
May, 2019
103
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
506
bam
501
tsv
493
bigWig
45
fastq
15
bed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
565
Homo sapiens
Biosample type
395
tissue
96
cell line
48
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
limb
3
liver
Project
520
AMP
45
HPAP
Genome assembly (visualization)
508
hg19
502
GRCh38
Lab
520
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
bone element
limb
lymph node
BIOSAMPLE
ASSAY
565 results
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total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
kidney (Cortex-Medulla)
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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