Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
6
ATAC-seq
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
485
Transcription
33
DNA accessibility
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
609
February, 2021
341
May, 2020
338
May, 2021
315
November, 2017
309
August, 2021
223
August, 2017
179
June, 2019
163
October, 2019
105
February, 2023
96
May, 2022
94
December, 2017
80
April, 2019
79
November, 2018
74
July, 2019
47
September, 2023
44
March, 2020
40
May, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2018
19
April, 2020
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
9
February, 2020
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
2
October, 2017
1
August, 2018
1
October, 2022
1
September, 2018
Available data
475
tsv
472
bam
469
bigWig
89
txt
39
fastq
6
csv
4
bed bedgraph
3
bed narrowPeak
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
609
Homo sapiens
Biosample type
537
tissue
42
primary cell
26
in vitro differentiated cells
4
cell line
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
vasculature
32
epithelium
pancreas
8
kidney
skeleton
6
limb
3
liver
Project
570
AMP
39
HPAP
Genome assembly (visualization)
476
hg19
470
GRCh38
Lab
570
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
brain
pancreas
skeleton
vasculature
BIOSAMPLE
ASSAY
609 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
snDrop-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 5 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cell line
HepG2
1
1
iPSC derived cell line
2
See all biosamples
Download