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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 96total RNA-seq
  • 84RNA microarray
  • 27snATAC-seq
  • 18single cell RNA-seq
  • 17ATAC-seq
  • 8ChIP-seq
  • 6WGBS
  • 3snDrop-seq
  • 1pCHi-C
Assay category
  • 114Transcription
  • 44DNA accessibility
  • 8DNA binding
  • 6DNA methylation
Target of assay
  • 5transcription factor
  • 3control
Date released
  • 406November, 2017
  • 397May, 2021
  • 341May, 2020
  • 314August, 2021
  • 310October, 2019
  • 286August, 2017
  • 260February, 2021
  • 200June, 2019
  • 200May, 2022
  • 191February, 2023
  • 166July, 2018
  • 120May, 2019
  • 94December, 2017
  • 90July, 2019
  • 87November, 2018
  • 80April, 2019
  • 73September, 2018
  • 62March, 2020
  • 60November, 2019
  • 59September, 2020
  • 53October, 2018
  • 47April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 23February, 2020
  • 22October, 2017
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 11September, 2017
  • 10December, 2019
  • 10November, 2020
  • 7August, 2020
  • 7January, 2018
  • 5March, 2019
  • 5March, 2023
  • 4October, 2022
  • 3August, 2018
  • 3June, 2018
  • 1August, 2022
  • 1July, 2025
Available data
  • 121bam
  • 110tsv
  • 101bigWig
  • 89txt
  • 45fastq
  • 22bed narrowPeak
  • 8tagAlign
  • 6csv
  • 1bed bed3
  • 1bed bed3+
Organism
  • 260Homo sapiens
Biosample type
  • 101tissue
  • 96cell line
  • 45primary cell
  • 18in vitro differentiated cells
Organ
  • connective tissue
  • 386adipose tissue
  • 150bone element
  • 66artery
  • 66blood vessel
  • 66heart
  • 66vasculature
  • 32epithelium
  • 32pancreas
  • 8kidney
  • 8skeleton
  • 6limb
  • 3liver
Project
  • 215AMP
  • 45HPAP
Genome assembly (visualization)
  • 119hg19
  • 118GRCh38
Lab
  • 215AMP-T2D consortium
  • 45Klaus Kaestner, Upenn
Audit category:
  • 128inconsistent ontology term
  • 32audit script error
  • 1inconsistent replicate
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

260 results

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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element84
kidney5
distal epiphysis1
distal epiphysis of femur1
distal epiphysis of humerus1
cell line
smooth muscle cell of the coronary artery5286
EndoC_BH126
HepG211
iPSC derived cell line2
primary cell
Langerhans cell2712
pancreatic alpha cell6
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)18
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