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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 519total RNA-seq
  • 84RNA microarray
  • 27snATAC-seq
  • 22ATAC-seq
  • 18single cell RNA-seq
  • 8ChIP-seq
  • 3snDrop-seq
  • 2pCHi-C
Assay category
  • 537Transcription
  • 49DNA accessibility
  • 8DNA binding
Target of assay
  • 5transcription factor
  • 3control
Date released
  • 683February, 2021
  • 400November, 2017
  • 382August, 2017
  • 373May, 2021
  • 341May, 2020
  • 313August, 2021
  • 279October, 2019
  • 198June, 2019
  • 153February, 2023
  • 135July, 2018
  • 120May, 2022
  • 115May, 2019
  • 95July, 2019
  • 88November, 2018
  • 80April, 2019
  • 75December, 2017
  • 74October, 2018
  • 58March, 2020
  • 47September, 2023
  • 45November, 2019
  • 40May, 2024
  • 40September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16April, 2018
  • 16January, 2021
  • 15May, 2023
  • 12September, 2018
  • 10November, 2020
  • 8January, 2018
  • 6September, 2017
  • 5March, 2019
  • 5March, 2023
  • 4December, 2019
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1July, 2025
  • 1October, 2022
Available data
  • 546bam
  • 527tsv
  • 525bigWig
  • 89txt
  • 39fastq
  • 23bed narrowPeak
  • 8tagAlign
  • 6csv
  • 4bed bedgraph
  • 2bed bed3
  • 2bed bed3+
Organism
  • 683Homo sapiens
Biosample type
  • 545tissue
  • 70cell line
  • 42primary cell
  • 26in vitro differentiated cells
Organ
  • 455connective tissue
  • 386adipose tissue
  • 150bone element
  • 66artery
  • 66blood vessel
  • 66heart
  • 66vasculature
  • epithelium
  • 32pancreas
  • 8kidney
  • 8skeleton
  • 6limb
  • 3liver
Project
  • 644AMP
  • 39HPAP
Genome assembly (visualization)
  • 548hg19
  • 542GRCh38
Lab
  • 644AMP-T2D consortium
  • 39Klaus Kaestner, Upenn
Audit category:
  • 102inconsistent ontology term
  • 32audit script error
  • 1inconsistent replicate
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

683 results

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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue381
bone element84
bone tissue58
kidney5
visceral abdominal adipose tissue3
cell line
smooth muscle cell of the coronary artery5286
HepG211
iPSC derived cell line2
primary cell
Langerhans cell2712
osteoblast111
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)18
adipocyte44
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