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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 27snATAC-seq
  • 22ATAC-seq
  • 8ChIP-seq
  • 6WGBS
  • 2pCHi-C
  • 1total RNA-seq
Assay category
  • 49DNA accessibility
  • 8DNA binding
  • 6DNA methylation
  • 1Transcription
Target of assay
  • 5transcription factor
  • 3control
Date released
  • 406November, 2017
  • 322August, 2017
  • 288October, 2019
  • 218June, 2019
  • 217May, 2021
  • 196May, 2020
  • 140May, 2022
  • 134August, 2021
  • 120May, 2019
  • 111February, 2023
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 66February, 2021
  • 59July, 2019
  • 49March, 2020
  • 46September, 2018
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 23October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 10April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
Available data
  • 33fastq
  • 28bam
  • 23bed narrowPeak
  • 8tagAlign
  • 7bigWig
  • 7tsv
  • 4bed bedgraph
  • 2bed bed3
  • 2bed bed3+
Organism
  • 66Homo sapiens
Biosample type
  • 36primary cell
  • 18cell line
  • 8tissue
  • 4in vitro differentiated cells
Organ
  • 14artery
  • 14blood vessel
  • 14heart
  • 14vasculature
  • 8bone element
  • 8skeleton
  • 7connective tissue
  • 6epithelium
  • 6limb
  • 6pancreas
  • 2liver
Project
  • 33AMP
  • 33HPAP
Genome assembly (visualization)
  • 30hg19
  • 24GRCh38
Lab
  • 33AMP-T2D consortium
  • 33Klaus Kaestner, Upenn
Audit category:
  • 27audit script error
  • 1inconsistent replicate
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

66 results

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Clear Filters
snATAC-seq
ATAC-seq
ChIP-seq
WGBS
pCHi-C
total RNA-seq
primary cell
Langerhans cell27
pancreatic alpha cell6
osteoblast111
cell line
smooth muscle cell of the coronary artery86
HepG211
iPSC derived cell line2
tissue
distal epiphysis1
distal epiphysis of femur1
distal epiphysis of humerus1
distal epiphysis of tibia1
proximal epiphysis1
in vitro differentiated cells
adipocyte4
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