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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 539total RNA-seq
  • 84RNA microarray
  • 27snATAC-seq
  • 21ATAC-seq
  • 17single cell RNA-seq
  • 8ChIP-seq
  • 6WGBS
  • 1pCHi-C
  • 1snDrop-seq
Assay category
  • 556Transcription
  • 48DNA accessibility
  • 8DNA binding
  • 6DNA methylation
Target of assay
  • 5transcription factor
  • 3control
Date released
  • 704February, 2021
  • 406November, 2017
  • 378August, 2017
  • 271August, 2021
  • 265May, 2021
  • 264October, 2019
  • 253May, 2020
  • 198May, 2022
  • 188June, 2019
  • 158February, 2023
  • 124July, 2018
  • 120May, 2019
  • 91December, 2017
  • 86November, 2018
  • 79April, 2019
  • 75October, 2018
  • 72July, 2019
  • 72September, 2018
  • 60November, 2019
  • 59September, 2020
  • 47September, 2023
  • 40May, 2024
  • 38February, 2018
  • 35December, 2018
  • 32March, 2020
  • 30January, 2019
  • 19April, 2020
  • 16October, 2017
  • 15May, 2023
  • 14January, 2021
  • 12November, 2020
  • 10April, 2018
  • 10December, 2019
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 4March, 2023
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 564bam
  • 551tsv
  • 544bigWig
  • 89txt
  • 45fastq
  • 22bed narrowPeak
  • 8tagAlign
  • 5csv
  • 4bed bedgraph
  • 1bed bed3
  • 1bed bed3+
Organism
  • 704Homo sapiens
Biosample type
  • 537tissue
  • 96cell line
  • 45primary cell
  • 26in vitro differentiated cells
Organ
  • 447connective tissue
  • 381adipose tissue
  • 150bone element
  • 66artery
  • 66blood vessel
  • 66heart
  • 66vasculature
  • 32epithelium
  • 32pancreas
  • 8skeleton
  • 6kidney
  • 6limb
  • 2liver
Project
  • 659AMP
  • 45HPAP
Genome assembly (visualization)
  • 566hg19
  • 561GRCh38
Lab
  • 659AMP-T2D consortium
  • 45Klaus Kaestner, Upenn
Audit category:
  • 128inconsistent ontology term
  • 32audit script error
  • 1inconsistent replicate
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

704 results

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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
snDrop-seq
tissue
adipose tissue381
bone element84
bone tissue58
kidney5
distal epiphysis1
cell line
smooth muscle cell of the coronary artery5286
EndoC_BH126
HepG211
iPSC derived cell line2
primary cell
Langerhans cell2712
pancreatic alpha cell6
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)18
adipocyte44
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