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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 527total RNA-seq
  • 84RNA microarray
  • 27snATAC-seq
  • 18single cell RNA-seq
  • 17ATAC-seq
  • 6ChIP-seq
  • 3snDrop-seq
  • 1pCHi-C
Assay category
  • 545Transcription
  • 44DNA accessibility
  • 6DNA binding
Target of assay
  • 3control
  • 3transcription factor
Date released
  • 683February, 2021
  • 388August, 2017
  • 385May, 2021
  • 301August, 2021
  • 285May, 2020
  • 240October, 2019
  • 200May, 2022
  • 199February, 2023
  • 186June, 2019
  • 167July, 2018
  • 111November, 2017
  • 106May, 2019
  • 84July, 2019
  • 79April, 2019
  • 73September, 2018
  • 69October, 2018
  • 59September, 2020
  • 49April, 2018
  • 48March, 2020
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 38November, 2019
  • 35December, 2017
  • 26November, 2018
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 15May, 2023
  • 13January, 2021
  • 11September, 2017
  • 10November, 2020
  • 9January, 2019
  • 8January, 2018
  • 7August, 2020
  • 7December, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3December, 2019
  • 3June, 2018
  • 1August, 2022
  • 1July, 2025
Available data
  • 551bam
  • 535tsv
  • 531bigWig
  • 89txt
  • 39fastq
  • 20bed narrowPeak
  • 6csv
  • 6tagAlign
  • 1bed bed3
  • 1bed bed3+
Organism
  • 683Homo sapiens
Biosample type
  • 545tissue
  • 92cell line
  • 42primary cell
  • 4in vitro differentiated cells
Organ
  • 451connective tissue
  • 386adipose tissue
  • 150bone element
  • 64artery
  • 64blood vessel
  • 64heart
  • 64vasculature
  • 26epithelium
  • 26pancreas
  • 8kidney
  • 8skeleton
  • 6limb
  • 1liver
Project
  • 644AMP
  • 39HPAP
Genome assembly (visualization)
  • 548hg19
  • 547GRCh38
Lab
  • 644AMP-T2D consortium
  • 39Klaus Kaestner, Upenn
Audit category:
  • 110inconsistent ontology term
  • 32audit script error
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

683 results

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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue381
bone element84
bone tissue58
kidney5
visceral abdominal adipose tissue3
cell line
smooth muscle cell of the coronary artery5284
EndoC_BH126
iPSC derived cell line2
primary cell
Langerhans cell2712
osteoblast111
in vitro differentiated cells
adipocyte4
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