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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 24total RNA-seq
  • 6ATAC-seq
  • 6WGBS
  • 2ChIP-seq
  • 2pCHi-C
  • 2snDrop-seq
  • 1single cell RNA-seq
Assay category
  • 25Transcription
  • 6DNA accessibility
  • 6DNA methylation
  • 2DNA binding
Target of assay
  • 2transcription factor
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 56August, 2017
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 32tsv
  • 29bam
  • 27bigWig
  • 6fastq
  • 4bed bedgraph
  • 4bed narrowPeak
  • 2bed bed3
  • 2bed bed3+
  • 2tagAlign
  • 1csv
Organism
  • 43Homo sapiens
Biosample type
  • 22in vitro differentiated cells
  • 9primary cell
  • 8tissue
  • 4cell line
Organ
  • 12connective tissue
  • 6epithelium
  • 6pancreas
  • 5adipose tissue
  • 3liver
  • 2artery
  • 2blood vessel
  • 2heart
  • 2kidney
  • 2vasculature
Project
  • 37AMP
  • 6HPAP
Genome assembly (visualization)
  • 34hg19
  • 28GRCh38
Lab
  • 37AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
Audit category:
  • 18inconsistent ontology term
  • 1inconsistent replicate
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

43 results

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Clear Filters
total RNA-seq
ATAC-seq
WGBS
ChIP-seq
pCHi-C
snDrop-seq
single cell RNA-seq
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)18
adipocyte4
primary cell
pancreatic alpha cell6
osteoblast111
tissue
visceral abdominal adipose tissue3
subcutaneous adipose tissue2
kidney (cortex)1
kidney (medulla)1
liver1
cell line
HepG211
smooth muscle cell of the coronary artery2
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