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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 521total RNA-seq
  • 84RNA microarray
  • 27snATAC-seq
  • 17single cell RNA-seq
  • 16ATAC-seq
  • 6ChIP-seq
  • 1snDrop-seq
Assay category
  • 538Transcription
  • 43DNA accessibility
  • 6DNA binding
Target of assay
  • 3control
  • 3transcription factor
Date released
  • 672February, 2021
  • 355August, 2017
  • 253August, 2021
  • 251May, 2021
  • 198May, 2022
  • 197May, 2020
  • 190October, 2019
  • 156June, 2019
  • 152February, 2023
  • 123July, 2018
  • 111November, 2017
  • 106May, 2019
  • 78April, 2019
  • 72September, 2018
  • 68October, 2018
  • 59September, 2020
  • 48July, 2019
  • 47September, 2023
  • 40May, 2024
  • 38February, 2018
  • 37November, 2019
  • 32December, 2017
  • 24November, 2018
  • 19April, 2020
  • 16March, 2020
  • 16October, 2017
  • 15May, 2023
  • 11January, 2021
  • 10April, 2018
  • 9January, 2019
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 7December, 2018
  • 6November, 2020
  • 4March, 2023
  • 3December, 2019
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 543bam
  • 527tsv
  • 524bigWig
  • 89txt
  • 39fastq
  • 19bed narrowPeak
  • 6tagAlign
  • 5csv
Organism
  • 672Homo sapiens
Biosample type
  • 537tissue
  • 92cell line
  • 39primary cell
  • 4in vitro differentiated cells
Organ
  • 443connective tissue
  • 381adipose tissue
  • 150bone element
  • 64artery
  • 64blood vessel
  • 64heart
  • 64vasculature
  • 26epithelium
  • 26pancreas
  • 8skeleton
  • 6kidney
  • 6limb
Project
  • 633AMP
  • 39HPAP
Genome assembly (visualization)
  • 540GRCh38
  • 540hg19
Lab
  • 633AMP-T2D consortium
  • 39Klaus Kaestner, Upenn
Audit category:
  • 110inconsistent ontology term
  • 32audit script error
BIOSAMPLE
ASSAY

672 results

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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snDrop-seq
tissue
adipose tissue381
bone element84
bone tissue58
kidney5
distal epiphysis1
cell line
smooth muscle cell of the coronary artery5284
EndoC_BH126
iPSC derived cell line2
primary cell
Langerhans cell2712
in vitro differentiated cells
adipocyte4
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