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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ATAC-seq
48
total RNA-seq
41
WGBS
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
70
DNA accessibility
48
Transcription
41
DNA methylation
Date released
186
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
54
November, 2019
47
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
80
zippedFastqFolder
61
fastq
24
bam
18
bed narrowPeak
6
txt
Organism
159
Homo sapiens
Biosample type
117
primary cell
42
tissue
1
cell line
Organ
160
pancreas
132
epithelium
40
liver
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
8
bone element
8
skeleton
2
musculature of body
1
adipose tissue
1
brain
Project
117
HPAP
25
AMP
18
T1D
Genome assembly (visualization)
18
hg19
Lab
117
Klaus Kaestner, Upenn
42
Kyle Gaulton, UCSD
1
AMP-T2D consortium
organ_slims!
limb
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
160 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
22
27
25
pancreatic beta cell
13
10
16
pancreatic acinar cell
4
tissue
islet of Langerhans
29
11
2
cell line
EndoC_BH1
1
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